SanityCheckIndData

Input name of the created mSet Object

mSetObj

Input name of the dataset to perform the sanity check.

dataName

Performs a sanity check on each-uploaded dataset for meta-analysis. Briefly, this function
will exclude empty rows, check class labels, ensure only 2 groups are being compared within the dataset, 
ensure sample names are unique, remove low quality samples/features, and replace missing values.

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

SanityCheckIndData: Sanity check of individual datasets for meta-analysis

Description

Usage

Arguments