SearchNetDB

Input name of the created mSet Object

mSetObj

db.type

Input the organism code for the sqlite table (ppi). For chemical type, the 
table.nm is drugbank of ctd

table.nm

Logical, only used for the STRING database

require.exp

Input the minimal score, only used for the STRING database

min.score

This function performs mapping of user's data to the internal network
to create a network from the seed nodes

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

SearchNetDB: Perform mapping of user's data to interaction network

Description

Usage

Arguments