SetCurrentMsetLib

Input the name of the created mSetObj (see InitDataObjects)

mSetObj

Input user selected name of library, "self", "pathway", "blood", "urine", "csf", "snp", "predicted",
"location", "drug"

lib.type

Users input the mimimum number compounds within selected metabolite sets (metabolitesets &lt; excludeNum)

excludeNum

if enrichment analysis, also prepare lib by
creating a list of metabolite sets

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

SetCurrentMsetLib: Set current user selected metset library for search

Description

Usage

Arguments