Perform volcano analysis
Volcano.Anal(mSetObj=NA, paired=FALSE, fcthresh, cmpType, percent.thresh, nonpar=F, threshp, equal.var=TRUE, pval.type="raw")Input the name of the created mSetObj (see InitDataObjects)
Logical, T if data is paired, F if data is not.
Numeric, input the fold change threshold
Comparison type, 1 indicates group 1 vs group 2, and 2 indicates group 2 vs group 1
Only for paired data, numeric, indicate the significant count threshold
Logical, indicate if a non-parametric test should be used (T or F)
Numeric, indicate the p-value threshold
Logical, indicates if the group variance is equal (T) or unequal (F)
To indicate raw p-values, use "raw". To indicate FDR-adjusted p-values, use "fdr".