iPCA.Anal

<p>Input the name of the created mSetObj (see InitDataObjects)</p>

mSetObj

fileNm

<p>Perform PCA analysis, prepares a JSON file for interactive liveGraphics3D, as well as interactive 3D
PCA score and loading plots using the plotly R package. These plots are saved in the created mSetObj; to view these, 
type "mSetObj$imgSet$time$score3d" to view the interactive score plot, and "mSetObj$imgSet$time$load3d" to view
the interactive loading plot.</p>

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

Jasmine Chong

iPCA.Anal: Perform PCA analysis, prepare file for interactive liveGraphics3D

Description

Usage

Arguments