sARI

Soft adjusted Rand index, a soft agreement measure for class partitions incorporating assignment probabilities.

Provides a framework to perform soft clustering using
simplex-structured matrix factorisation (SSMF). The package contains a set of functions
for determining the optimal number of prototypes, the optimal algorithmic
parameters, the estimation confidence intervals and the diversity of clusters.
Abdolali, Maryam & Gillis, Nicolas (2020) <doi:10.1137/20M1354982>.

Wenxuan Liu

MetabolSSMF

Simplex-Structured Matrix Factorisation for Metabolomics
Analysis

Lorraine Brennan

sARI function

<dl><dt>partition1</dt>
<dd>Numeric matrix/data frame of the probabilities of assignment of observations in partition 1 (membership matrix).</dd>
<dt>partition2</dt>
<dd>Numeric matrix/data frame of the probabilities of assignment of observations in partition 2 (membership matrix).</dd></dl>

Arguments

Author

Soft adjusted Rand index. — sARI

<dl>

<dt>partition1</dt>
<dd>Numeric matrix/data frame of the probabilities of assignment of observations in partition 1 (membership matrix).</dd>


<dt>partition2</dt>
<dd>Numeric matrix/data frame of the probabilities of assignment of observations in partition 2 (membership matrix).</dd>

</dl>

sARI: Soft adjusted Rand index.

Description

Usage

Value

Arguments

Author

References