read_msdial

A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification. A detailed description of best practice usage may be found in the publication <doi:10.1007/978-1-4939-7819-9_20>.

Jan Lisec

MetabolomicsBasics

Basic Functions to Investigate Metabolomics Data Matrices

read_msdial function

<dl><dt>file</dt>
<dd>The alignment file as exported from MSDial.</dd>
<dt>sam</dt>
<dd>An additional sample list (data.frame) where one column can be matched to the file names provided by MSDial.</dd></dl>

Arguments

read_msdial — read_msdial

<dl>

<dt>file</dt>
<dd>The alignment file as exported from MSDial.</dd>


<dt>sam</dt>
<dd>An additional sample list (data.frame) where one column can be matched to the file names provided by MSDial.</dd>

</dl>

read_msdial: read_msdial

Description

Usage

Value

Arguments