findSeeds

<p>igraph object representing the metabolic graph of interest</p>

mbgraph

<p>Function finds strongly connected components within a bipartite metabolic network.
And selects for components with at least 1 outgoing edge and no inbound edges.
This is an implementation of Large-scale reconstruction and phylogenetic analysis of metabolic environments by Borenstein et al</p>

Functions for path based queries against 'Omics' <https://github.com/etheleon/omics-neo4j-container>, a 'NEO4J' <https://neo4j.com/> database populated with data from metagenomic surveys and their accompanying metabolic and taxonomic annotations.

Wesley GOI

findSeeds: To find all seed compounds in the metabolic graph

Description

Usage

Arguments