MetamapsDB (version 0.0.2)

mappingInfo: mappingInfo sequence analysis of contigs (for SIMULATION only)

Description

Used for mapping short reads against contigs using blast

Usage

mappingInfo(koi = "K00927", doBlast = FALSE, ...)

Arguments

koi

the KO of interest

doBlast

read from file or carry out blast

...

root, outputDir, query, rangesFile, genomesFile, blastFile

Examples

# NOT RUN {
blastfile = "~/simulation_fr_the_beginning/reAssemble/everybodyelse/out/simBlast/K00927/blast.tsv"
mappingInfo(blastfile, doBlast=FALSE)
# }