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MetamapsDB (version 0.0.2)

rolling: rolling A dynamic threshold for the killing redundant contigs

Description

outputs a data.frame with 2 columns 1.) rollingMean 2.) meanDepth

Usage

rolling(keptDF, wind = 15, interval = 10)

Arguments

keptDF

dataframe for the #repeats left after thresholding, columnnames thresholds, repeats

wind

window size

interval

interval size