Learn R Programming
MethTargetedNGS (version 1.4.0)

MethTargetedNGS-package: Methylation Analysis of Next Generation Sequencing data.

Description

This package helps in visualizing methylation in CpG sites in NGS data for given datasets (normal/tumor) and to identify differentially methylated CpG sites in normal/tumor. This package to help in perform profile hidden markov modelling of given sequences.

NOTE: For profile hidden markov model HMMER software is required

Arguments

Details

Package:
MethTargetedNGS
Type:
Package
Version:
1.0
Date:
2015-01-20
License:
Artistic-2.0
Compare methylation status/pattern between samples.

*compare_samples(healthy,tumor)

Sequence alignment and create methylation pattern

*methAlign(sequence_fasta, ref_seq)