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MethylSeekR (version 1.12.0)

Segmentation of Bis-seq data

Description

This is a package for the discovery of regulatory regions from Bis-seq data

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Version

Version

1.12.0

License

GPL (>=2)

Maintainer

Lukas Burger

Last Published

February 15th, 2017

Functions in MethylSeekR (1.12.0)

plotPMDSegmentation

Plotting the PMD Segmentation
readMethylome

Load Bis-seq data
plotAlphaDistributionOneChr

Calculate and plot alpha distribution.
plotFinalSegmentation

Plotting final segmentation
calculateFDRs

Determine false discovery rate
MethylSeekR-package

Segmentation of Bis-seq methylation data
savePMDSegments

Save PMD segments
saveUMRLMRSegments

Save UMR and LMR segments
segmentPMDs

PMD segmenter
segmentUMRsLMRs

Identify UMRs and LMRs
readSNPTable

Load SNP table
removeSNPs

Remove CpGs overlapping SNPs