Usage
simData(n.trt = 50, n.ctrl = 50, n.gene = 96, sigma.error, n.err = 10, mean.sample = 0.6, sigma.sample = 0.6, sigma.gene = 0, n.big.effect = 5, n.small.effect = 15, mean.big.effect = 5, mean.small.effect = 2)
Arguments
n.trt
Number of simulated treatment samples
n.ctrl
Number of simulated control samples
n.gene
Number of simulated genes in the panel
sigma.error
a vector of length 2 for 2 different measurement error sizes (sd).
n.err
number of genes with sigma.error[2]. The rest (n.gene - n.err) have sigma.error[1] measurement error.
mean.sample
the unadjusted mean of the samples. Can generally be left as default
sigma.sample
the unadjusted sample to sample sd. Can generallyb e left as default.
sigma.gene
sd of gene to gene effect sizes for large and small treatment effects.
n.big.effect
Number of genes with large treatment effect
n.small.effect
Number of genes with small treatment effect
mean.big.effect
Average effect size for a "large" treatment effect
mean.small.effect
Average effect size for a "small" treatment effect