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Version
Version
1.1
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Install
install.packages('MiRSEA')
Monthly Downloads
629
Version
1.1
License
GPL (>= 2)
Maintainer
Junwei Han
Last Published
July 1st, 2015
Functions in MiRSEA (1.1)
Search functions
GetPathwayData
Get the gene sets of pathways
GetMiRTargetData
Get the data of microRNA(miRNA) and target genes
envData
The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
MiRSEA-internal
MiRSEA internal functions
EnrichmentScore2
Computes the enrichment score faster
MiRSEA-package
MicroRNA Set Enrichment Analysis
HeatMapPlot
Plot a heatmap
EnrichmentScore
Computes the enrichment score
Corrp2miRfile
create a pathway-microRNA(miRNA) profile and a p value matrix
GetExampleData
Get the example data
PlotRunEnrichment
Plot running microRNAs(miRNAs) enrichment score
S2N
calculate signal to noise ratio for microRNAs(miRNAs)
PlotCorrelation
Plot global microRNA(miRNA) correlation profile
PlotHeatMap
Plot a heat map
MirSEA
Identify dysregulated pathways based on microRNA (miRNA) set enrichment analysis
MsReport
Produce report for a microRNA (abbreviated miRNA) set