setup_mosquito_BQ: Setup blood feeding & oviposition (BQ) behavioral state mosquito model

Description

This is a behavioral state model which allows for time varying EIP and survival probability. Mosquitoes transition between blood feeding (B) and oviposition (Q) depending on the success (or not) of those biological activities. It complies with the mosquito component interface, and may be simulated deterministically or stochastically.

Usage

setup_mosquito_BQ(
  model,
  stochastic,
  eip,
  pB,
  pQ,
  psiQ,
  Psi_bb,
  Psi_bq,
  Psi_qb,
  Psi_qq,
  nu = 25,
  M,
  Y
)

Value

no return value

Arguments

model: an object from make_MicroMoB
stochastic: should the model update deterministically or stochastically?
eip: the Extrinsic Incubation Period (may be time varying see time_varying_parameter)
pB: daily survival probability during blood feeding (may be time and patch varying see time_patch_varying_parameter)
pQ: daily survival probability during oviposition (may be time and patch varying see time_patch_varying_parameter)
psiQ: oviposition success probability (may be time and patch varying see time_patch_varying_parameter)
Psi_bb: movement matrix from blood feeding haunts to blood feeding haunts (columns must sum to 1, p rows and columns)
Psi_bq: movement matrix from blood feeding haunts to aquatic habitats (columns must sum to 1, l rows and p columns)
Psi_qb: movement matrix from aquatic habitats to blood feeding haunts (columns must sum to 1, p rows and l columns)
Psi_qq: movement matrix from aquatic habitats to aquatic habitats (columns must sum to 1, l rows and columns)
nu: number of eggs laid per oviposition
M: number of susceptible mosquitoes (vector of length p + l)
Y: number of incubating mosquitoes (matrix with p + l rows and maxEIP + 1 columns)