mut_depth_checked

<p>A dataset containing the information of reads for homology search.</p>

datasets

Clinical sequencing of tumor is usually performed on formalin-fixed
and paraffin-embedded samples and have many sequencing errors. We found that
the majority of these errors are detected in chimeric read caused by
single-strand DNA with micro-homology. Our filtering pipeline focuses on the
uneven distribution of the artifacts in each read and removes such errors in
formalin-fixed and paraffin-embedded samples without over-eliminating the
true mutations detected in fresh frozen samples.

Masachika Ikegami

MicroSEC

Sequence Error Filter for Formalin-Fixed and Paraffin-Embedded
Samples

mut_depth_checked function

<p>Three lists with 201 factors, each contains 29 variables:</p>

mut_depth_checked: An example sequence information file.

Description

Usage

Arguments

Format