plot.MicrobTiSDA.MSERvisual

This function prints feature cluster plots stored in a
<code>MicrobTiSDA.MSERvisual</code> object. Users can specify which groups and
which clusters within each group to plot. If <code>groups</code> or <code>clusters</code>
is <code>NULL</code>, all groups or clusters are plotted.

Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.

Shijia Li

MicrobTiSDA

Microbiome Time-Series Data Analysis

plot.MicrobTiSDA.MSERvisual function

<dl><dt>x</dt>
<dd>A <code>MicrobTiSDA.MSERvisual</code> object containing feature cluster plots
in the <code>plots</code> list element.</dd>
<dt>groups</dt>
<dd>A character vector specifying the names of groups to plot.
If <code>NULL</code>, all groups in <code>x$plots</code> will be plotted.</dd>
<dt>clusters</dt>
<dd>An integer vector specifying which clusters to plot within
each selected group. If <code>NULL</code>, all clusters are plotted.</dd>
<dt>...</dt>
<dd>Additional arguments</dd></dl>

Arguments

Plot Method for MicrobTiSDA MSER Visualization Objects — plot.MicrobTiSDA.MSERvisual

<dl>

<dt>x</dt>
<dd>A <code>MicrobTiSDA.MSERvisual</code> object containing feature cluster plots
in the <code>plots</code> list element.</dd>


<dt>groups</dt>
<dd>A character vector specifying the names of groups to plot.
If <code>NULL</code>, all groups in <code>x$plots</code> will be plotted.</dd>


<dt>clusters</dt>
<dd>An integer vector specifying which clusters to plot within
each selected group. If <code>NULL</code>, all clusters are plotted.</dd>


<dt>...</dt>
<dd>Additional arguments</dd>

</dl>

plot.MicrobTiSDA.MSERvisual: Plot Method for MicrobTiSDA MSER Visualization Objects

Description

Usage

Value

Arguments