plot.MicrobTiSDA.visual

This function prints feature cluster plots stored in a <code>MicrobTiSDA.visual</code> object.
Users can specify which groups and which clusters within each group to plot.
If <code>groups</code> is <code>NULL</code>, all groups will be displayed. If <code>clusters</code>
is <code>NULL</code>, all clusters within the selected groups will be plotted.

Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.

Shijia Li

MicrobTiSDA

Microbiome Time-Series Data Analysis

plot.MicrobTiSDA.visual function

<dl><dt>x</dt>
<dd>A <code>MicrobTiSDA.visual</code> object containing feature cluster plots
in the <code>plots</code> list element.</dd>
<dt>groups</dt>
<dd>A character vector specifying the names of groups to plot.
If <code>NULL</code>, all groups in <code>x$plots</code> will be plotted.</dd>
<dt>clusters</dt>
<dd>An integer vector specifying which clusters to plot within
each selected group. If <code>NULL</code>, all clusters are plotted.</dd>
<dt>...</dt>
<dd>Additional arguments (currently not used) for compatibility with
generic <code>plot</code> methods.</dd></dl>

Arguments

Plot Method for MicrobTiSDA Visual Objects — plot.MicrobTiSDA.visual

<dl>

<dt>x</dt>
<dd>A <code>MicrobTiSDA.visual</code> object containing feature cluster plots
in the <code>plots</code> list element.</dd>


<dt>groups</dt>
<dd>A character vector specifying the names of groups to plot.
If <code>NULL</code>, all groups in <code>x$plots</code> will be plotted.</dd>


<dt>clusters</dt>
<dd>An integer vector specifying which clusters to plot within
each selected group. If <code>NULL</code>, all clusters are plotted.</dd>


<dt>...</dt>
<dd>Additional arguments (currently not used) for compatibility with
generic <code>plot</code> methods.</dd>

</dl>

plot.MicrobTiSDA.visual: Plot Method for MicrobTiSDA Visual Objects

Description

Usage

Value

Arguments