hyperGTest
function
addGenesToGoReport(hgOver, universe, db = c("GO", "KEGG"), onto = c("CC", "MF", "BP"), annotation = NULL, entrez2symbol = NULL)hyperGTestGOHyperGParams.
Only used when argument db is "GO".summary(hgOver)) with an
additional column providing the gene Symbols included in
the significant gene sets.
hyperGTest which takes Entrez
Gene IDs as inputs to perform the enrichment analysis.
The goal of this function is to select the Entrez Gene
IDs responsible for the significant enrichment of a given
gene set and annotate them in to gene Symbol IDs. When
the annotation package annotation was used to map
feature IDs to Entrez Gene ID, it can also be used here
to map Entrez and Symbol IDs. If the annotation package
was not used, but the Entrez Gene IDs were directly
provided to the hyperGtest function, annotation is
expected to be NULL and entrez2symbol must be
specified. This function returns the outputs of function
hyperGTest which contain:
hyperGTest,
GOHyperGParams