annotReciprocal

data.frame which contains the graph
  description, must have two columns <code>n1</code> and
  <code>n2</code> filled with node IDs, each row denoting there
  is an edge from <code>n1</code> to <code>n2</code>.

dataGraph

file where the graph description is written

file

if TRUE <code>dataGraph</code> is
  restricted to reciprocal edges, else all edges are kept
  (default).

keepOnlyReciprocal


  This function notes edges of a graph as reciprocal or
  not.


The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.

Anne Biton

MineICA

Analysis of an ICA decomposition obtained on genomics data

annotReciprocal function

This function notes edges of a graph as reciprocal or
  not.

annotReciprocal: annotReciprocal

Description

Usage

Arguments

Value

Examples