getComp

getComp,IcaSet-method

getComp,IcaSet,character,numeric

getComp,IcaSet,character,numeric-method

Object of class <code><a rd-options="" href="/link/IcaSet?package=MineICA&version=1.12.0" data-mini-rdoc="MineICA::IcaSet">IcaSet</a></code>.

object

Either "features" to retrieve projections contained in
    <code>S</code>, or "genes" to retrieve projections contained in
    <code>SByGene</code>.

level

The index of the component to be retrieved.

This generic function retrieves, from an <code><a rd-options="" href="/link/IcaSet?package=MineICA&version=1.12.0" data-mini-rdoc="MineICA::IcaSet">IcaSet</a></code> object,
  the feature projections (contained in attribute <code>S</code>) and
  sample contributions (contained in attribute <code>A</code>)
  corresponding to a specific component.


The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.

Anne Biton

MineICA

Analysis of an ICA decomposition obtained on genomics data

getComp function

Object of class <code><a href="IcaSet" rd-options="">IcaSet</a></code>.

This generic function retrieves, from an <code><a href="IcaSet" rd-options="">IcaSet</a></code> object,
  the feature projections (contained in attribute <code>S</code>) and
  sample contributions (contained in attribute <code>A</code>)
  corresponding to a specific component.

getComp: Retrieve feature and sample values on a component stored in an `IcaSet` object.

Description

Usage

Arguments

Value

See Also