indComp

compNames

witGenes

indComp<-

indComp<-,IcaSet-method

compNames<-

compNames<-,IcaSet-method

witGenes<-

witGenes<-,IcaSet-method

setIndComp

setLabelsComp

setWitGenes

getIndComp

getLabelsComp

getWitGenes

object

Numeric vector for <code>indComp</code>, character vector for <code>compNames</code> and
    <code>witGenes</code>, with length equal to <code>ncol(A(object))</code>
    and containing: component indices (for
    <code>indComp</code>), labels (for <code>compNames</code>), or gene witness IDs (for <code>witGenes</code>).

value


  These generic functions access and set the attributes <code>compNames</code>, <code>indComp</code> and <code>witGenes</code>
   stored in an object of class <code>IcaSet</code>.


The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.

Anne Biton

MineICA

Analysis of an ICA decomposition obtained on genomics data

indComp function

These generic functions access and set the attributes <code>compNames</code>, <code>indComp</code> and <code>witGenes</code>
   stored in an object of class <code>IcaSet</code>.

Retrieve and set component labels, indices, and witness genes from IcaSet

indComp: Retrieve and set component labels, indices, and witness genes from IcaSet

Description

Usage

Arguments

Value