nbOccByGeneInComp

A list whose each element contains projection values of
    features/genes on a component.

Slist

A threshold to be used to define a gene as contributor

cutoff

A list whose each element contains projection values of
    contributing features/genes on a component (the difference with arg
   <code>Slist</code> is that <code>sel</code> is already restricted to the contributing genes).

For each feature/gene, this function returns the indices of the components they contribute to. 

The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.

Anne Biton

MineICA

Analysis of an ICA decomposition obtained on genomics data

nbOccByGeneInComp function

A list whose each element contains projection values of
    features/genes on a component.

A list whose each element contains projection values of
    contributing features/genes on a component (the difference with arg
   <code>Slist</code> is that <code>sel</code> is already restricted to the contributing genes).

For each feature/gene, this function returns the indices of the components they contribute to.

nbOccByGeneInComp: nbOccByGeneInComp

Description

Usage

Arguments

Value

Examples