readS

The file which contains the matrix of
  feature projections. It must be a txt file where the
  separator is <code>white space</code>, that is one or more
  spaces, tabs, newlines or carriage returns.

Sfile

The file which contains the matrix (of
  dimension features x samples) based on which the matrix S
  was calculated. It must be a txt file where the separator
  is <code>white space</code>, that is one or more spaces, tabs,
  newlines or carriage returns.

datfile

The data based on which the matrix A was
  calculated (features x samples)

TRUE (default) if the Afile contains
  rownames of matrix A, FALSE if the rownames has to be
  extracted from dat

annot


  This function reads and annotates matrix S.


internal

The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.

readS: read S

Description

Usage

Arguments

Value

Details