writeRnkFiles

icaSet

If TRUE (default) the absolute projection
  values are used.

The path that will contain the rnk files.

path


  Writes the gene projection values of each component in a
  '.rnk' file for GSEA.


The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.

Anne Biton

MineICA

Analysis of an ICA decomposition obtained on genomics data

writeRnkFiles function

Writes the gene projection values of each component in a
  '.rnk' file for GSEA.

writeRnkFiles: Write rnk files containing gene projections

Description

Usage

Arguments

Value

Details