MixMAP (version 1.3.4)

Summary: Summary of a MixMAP object

Description

Displays a summary of the MixMAP object.

Usage

"summary"(mixmap.object)

Arguments

mixmap.object

An object of class MixMAP, which is output from the function MixMAP.

Value

Returns a summary of the MixMAP object.

Details

This method returns up to the top ten detected genes as well as information on the total number of genes and the number of genes detected.

References

Foulkes, A.S., Matthews, G.J., Das, U., Ferguson, J., Reilly, M. (2013) ``Mixed Modeling of Meta-Analysis P-Values (MixMAP) Suggests Multiple Novel Gene Loci for Low Density Lipoprotein Cholesterol". PLoS ONE 8(2): e54812.

Matthews, G.J. and Foulkes, A.S. (2015) ``MixMAP: An R Package for Mixed Modeling of Meta-Analysis $p$ Values in Genetic Association Studies." Journal of Statistical Software. 66(3): 1-11.

Examples

data(MixMAP_example)
#Run mixmapTest
MixOut<-mixmapTest(MixMAP_example,pval="GC.Pvalue",snp="MarkerName",
  chr="Chr",coord="Coordinate",gene="Gene")
summary(MixOut)

#Run mixmapPI
MixOutPI<-mixmapPI(MixMAP_example,pval="GC.Pvalue",snp="MarkerName",
  chr="Chr",coord="Coordinate",gene="Gene")
summary(MixOutPI)