MixSIAR (version 3.1.10)

mixsiar_gui: Run the GUI version of MixSIAR

Description

mixsiar_gui creates the GUI version of MixSIAR.

Usage

mixsiar_gui()

Value

mixsiar_gui itself returns nothing, but using the GUI creates R objects that you can access from the console:

• mixsiar$mix: mixture data, output of load_mix_data)

• mixsiar$source: source data, output of load_source_data)

• mixsiar$discr: discrimination (TDF) data, output of load_discr_data

• mixsiar$jags.1: rjags model object with MCMC chains, output of run_model

Details

Before running this function, a new user will need to install JAGS and GTK+. See Section 2 of the manual for install instructions: https://github.com/brianstock/MixSIAR/blob/master/inst/mixsiar_manual_small.pdf

mixsiar_gui calls most of the other MixSIAR functions:

• load_mix_data

• load_source_data

• load_discr_data

• plot_data

• plot_prior

• write_JAGS_model

• run_model

• output_JAGS

See Also

load_mix_data loads the mixture data file,

load_source_data loads the source data file,

load_discr_data loads the TDF data file,

plot_data creates an isospace plot,

plot_prior plots your prior and the uninformative prior,

write_JAGS_model creates a JAGS model file (.txt),

run_model sets up JAGS objects and calls JAGS to run the model,

output_JAGS processes the JAGS output (prints/saves diagnostics, summary statistics, and plots)

Examples

# NOT RUN {
mixsiar_gui()

# }