TableS2_serial_interval_mean_

A data frame of infector-infectee pairs with demographic and serial interval information.

datasets

Provides various functions for parameter estimation of one-dimensional
stable distributions and their mixtures. It implements a diverse set of
estimation methods, including quantile-based approaches, regression methods
based on the empirical characteristic function (empirical, kernel, and
recursive), and maximum likelihood estimation. For mixture models, it provides
stochastic expectation–maximization (SEM) algorithms and Bayesian estimation
methods using sampling and importance sampling to overcome the long burn-in
period of Markov Chain Monte Carlo (MCMC) strategies. The package also includes
tools and statistical tests for analyzing whether a dataset follows a stable
distribution. Some of the implemented methods are described in
Hajjaji, O., Manou-Abi, S. M., and Slaoui, Y. (2024) <doi:10.1080/02664763.2024.2434627>.

Solym Manou-Abi

MixStable

Parameter Estimation for Stable Distributions and Their Mixtures

Adam Najib

Yousri Slaoui

TableS2_serial_interval_mean_ function

A data frame with columns:<dl>
 <dt>infector_id</dt>
<dd>Character. Infector ID.</dd> <dt>infector_age</dt>
<dd>Numeric. Age of infector.</dd> <dt>infector_sex</dt>
<dd>Character. Sex of infector.</dd> <dt>infector_onsetDate</dt>
<dd>Date. Infector symptom onset.</dd> <dt>infector_labConfirmDate</dt>
<dd>Date. Infector lab confirmation.</dd> <dt>infectee_id</dt>
<dd>Character. Infectee ID.</dd> <dt>infectee_age</dt>
<dd>Numeric. Age of infectee.</dd> <dt>infectee_sex</dt>
<dd>Character. Sex of infectee.</dd> <dt>infectee_onsetDate</dt>
<dd>Date. Infectee symptom onset.</dd> <dt>infectee_labConfirmDate</dt>
<dd>Date. Infectee lab confirmation.</dd> <dt>serial_interval_mean_based</dt>
<dd>Numeric. Mean-based serial interval.</dd>
</dl>

Format

Example transmission pair data with mean serial interval — TableS2_serial_interval_mean_

A data frame with columns:<dl>
 <dt>infector_id</dt>
<dd>Character. Infector ID.</dd>

 <dt>infector_age</dt>
<dd>Numeric. Age of infector.</dd>

 <dt>infector_sex</dt>
<dd>Character. Sex of infector.</dd>

 <dt>infector_onsetDate</dt>
<dd>Date. Infector symptom onset.</dd>

 <dt>infector_labConfirmDate</dt>
<dd>Date. Infector lab confirmation.</dd>

 <dt>infectee_id</dt>
<dd>Character. Infectee ID.</dd>

 <dt>infectee_age</dt>
<dd>Numeric. Age of infectee.</dd>

 <dt>infectee_sex</dt>
<dd>Character. Sex of infectee.</dd>

 <dt>infectee_onsetDate</dt>
<dd>Date. Infectee symptom onset.</dd>

 <dt>infectee_labConfirmDate</dt>
<dd>Date. Infectee lab confirmation.</dd>

 <dt>serial_interval_mean_based</dt>
<dd>Numeric. Mean-based serial interval.</dd>


</dl>

TableS2_serial_interval_mean_: Example transmission pair data with mean serial interval

Description

Usage

Arguments

Format