MoBPS (version 1.13.1)

calculate.bv: Calculate breeding values

Description

Internal function to calculate the breeding value of a given individual

Usage

calculate.bv(
  population,
  gen,
  sex,
  nr,
  activ_bv,
  import.position.calculation = NULL,
  decodeOriginsU = decodeOriginsR,
  store.effect.freq = FALSE,
  bit.storing = FALSE,
  nbits = 30,
  output_compressed = FALSE,
  bv.ignore.traits = NULL
)

Value

[[1]] true genomic value [[2]] allele frequency at QTL markers

Arguments

population

Population list

gen

Generation of the individual of interest

sex

Sex of the individual of interest

nr

Number of the individual of interest

activ_bv

traits to consider

import.position.calculation

Function to calculate recombination point into adjacent/following SNP

decodeOriginsU

Used function for the decoding of genetic origins [[5]]/[[6]]

store.effect.freq

If TRUE store the allele frequency of effect markers per generation

bit.storing

Set to TRUE if the MoBPS (not-miraculix! bit-storing is used)

nbits

Bits available in MoBPS-bit-storing

output_compressed

Set to TRUE to get a miraculix-compressed genotype/haplotype

bv.ignore.traits

Vector of traits to ignore in the calculation of the genomic value (default: NULL; Only recommended for high number of traits and experienced users!)

Examples

data(ex_pop)
calculate.bv(ex_pop, gen=1, sex=1, nr=1, activ_bv = 1)