get.maf

Function to calculate minor allele frequencies

Framework for the simulation framework for the simulation of complex breeding programs and compare their economic and genetic impact. Associated publication: Pook et al. (2020) <doi:10.1534/g3.120.401193>.

Torsten Pook

MoBPS

Modular Breeding Program Simulator

Johannes Geibel

Azadeh Hassanpour

Tobias Niehoff

get.maf function

<dl><dt>population</dt>
<dd>Population list</dd>
<dt>database</dt>
<dd>Groups of individuals to consider for the export</dd>
<dt>gen</dt>
<dd>Quick-insert for database (vector of all generations to export)</dd>
<dt>cohorts</dt>
<dd>Quick-insert for database (vector of names of cohorts to export)</dd>
<dt>id</dt>
<dd>Individual IDs to search/collect in the database</dd></dl>

Arguments

Calculate minor allele frequencies — get.maf

<dl>

<dt>population</dt>
<dd>Population list</dd>


<dt>database</dt>
<dd>Groups of individuals to consider for the export</dd>


<dt>gen</dt>
<dd>Quick-insert for database (vector of all generations to export)</dd>


<dt>cohorts</dt>
<dd>Quick-insert for database (vector of names of cohorts to export)</dd>


<dt>id</dt>
<dd>Individual IDs to search/collect in the database</dd>

</dl>

get.maf: Calculate minor allele frequencies

Description

Usage

Value

Arguments

Examples