MoBPS (version 1.13.1)

get.pedigree: Derive pedigree

Description

Derive pedigree for selected individuals

Usage

get.pedigree(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  founder.zero = TRUE,
  raw = FALSE,
  use.id = TRUE,
  id = NULL,
  use.first.copy = FALSE,
  include.error = FALSE,
  depth = 1
)

Value

Pedigree-file for in gen/database/cohorts selected individuals

Arguments

population

Population list

database

Groups of individuals to consider for the export

gen

Quick-insert for database (vector of all generations to export)

cohorts

Quick-insert for database (vector of names of cohorts to export)

founder.zero

Parents of founders are displayed as "0" (default: TRUE)

raw

Set to TRUE to not convert numbers into Sex etc.

use.id

Set to TRUE to extract individual IDs

id

Individual IDs to search/collect in the database

use.first.copy

Set to TRUE to use database-position of the first copy of an individual (default: FALSE)

include.error

Set to TRUE to include errors simulated in the pedigree

depth

Depth (1) for parents, (2) for grandparents, (3) for grandgrandparents etc.

Examples

data(ex_pop)
pedigree = get.pedigree(ex_pop, gen=2)