kinship.emp.fast

Function to compute empirical kinship for a set of individuals (not all pairs of individuals are evaluated)

Framework for the simulation framework for the simulation of complex breeding programs and compare their economic and genetic impact. Associated publication: Pook et al. (2020) <doi:10.1534/g3.120.401193>.

Torsten Pook

MoBPS

Modular Breeding Program Simulator

Johannes Geibel

Azadeh Hassanpour

Tobias Niehoff

kinship.emp.fast function

<dl><dt>population</dt>
<dd>Population list</dd>
<dt>animals</dt>
<dd>List of animals to compute kinship for</dd>
<dt>gen</dt>
<dd>Quick-insert for database (vector of all generations to export)</dd>
<dt>database</dt>
<dd>Groups of individuals to consider for the export</dd>
<dt>cohorts</dt>
<dd>Quick-insert for database (vector of names of cohorts to export)</dd>
<dt>ibd.obs</dt>
<dd>Number of Individual pairs to sample for IBD estimation</dd>
<dt>hbd.obs</dt>
<dd>Number of Individuals to sample for HBD estimation</dd></dl>

Arguments

Approximate empirical kinship — kinship.emp.fast

<dl>

<dt>population</dt>
<dd>Population list</dd>


<dt>animals</dt>
<dd>List of animals to compute kinship for</dd>


<dt>gen</dt>
<dd>Quick-insert for database (vector of all generations to export)</dd>


<dt>database</dt>
<dd>Groups of individuals to consider for the export</dd>


<dt>cohorts</dt>
<dd>Quick-insert for database (vector of names of cohorts to export)</dd>


<dt>ibd.obs</dt>
<dd>Number of Individual pairs to sample for IBD estimation</dd>


<dt>hbd.obs</dt>
<dd>Number of Individuals to sample for HBD estimation</dd>

</dl>

kinship.emp.fast: Approximate empirical kinship

Description

Usage

Value

Arguments

Examples