{"Package":"MolgenisArmadillo","Type":"Package","Version":"2.9.3","Title":"Armadillo Client for the Armadillo Service","Description":"A set of functions to manage data shared on a\n'MOLGENIS Armadillo' server.","Authors@R":"c(\nperson(given = \"Mariska\",\nfamily = \"Slofstra\",\nrole = c(\"aut\", \"cre\"),\nemail = \"m.k.slofstra@umcg.nl\",\ncomment = c(ORCID = \"0000-0002-0400-0468\")),\nperson(given = \"Sido\",\nfamily = \"Haakma\",\nrole = c(\"aut\"),\nemail = \"s.haakma@rug.nl\",\ncomment = c(ORCID = \"0000-0003-1278-9144\")),\nperson(given = \"Tommy\",\nfamily = \"de Boer\",\nrole = c(\"aut\"),\nemail = \"t.de.boer01@umcg.nl\",\ncomment = c(ORCID = \"0000-0002-4492-7225\")),\nperson(given = \"Fleur\",\nfamily = \"Kelpin\",\nrole = c(\"aut\"),\nemail = \"fleur@kelpin.nl\",\ncomment = c(ORCID = \"0000-0003-1527-5130\")),\nperson(given = \"Morris\",\nfamily = \"Swertz\",\nrole = c(\"aut\"),\nemail = \"m.a.swertz@rug.nl\",\ncomment = c(ORCID = \"0000-0002-0979-3401\")),\nperson(given = \"Tim\",\nfamily = \"Cadman\",\nrole = c(\"aut\"),\nemail = \"t.j.cadman@umcg.nl\",\ncomment = c(ORCID = \"0000-0002-7682-5645\"))\n)","Maintainer":"Mariska Slofstra ","Depends":"R (>= 4.1.0)","Imports":"base64enc, httr, urltools, dplyr, purrr, stringr, tidyr,\ntibble, MolgenisAuth (>= 0.0.25), arrow, rlist, httr2, readr,\ncli","Suggests":"stringi, withr, knitr, testthat, webmockr, mockery, datasets,\nrmarkdown","License":"LGPL (>= 2.1)","URL":"https://github.com/molgenis/molgenis-r-armadillo/,\nhttps://molgenis.github.io/molgenis-r-armadillo/","BugReports":"https://github.com/molgenis/molgenis-r-armadillo/issues/","RoxygenNote":"7.3.3","VignetteBuilder":"knitr","Encoding":"UTF-8","Config/testthat/edition":"3","NeedsCompilation":"no","Packaged":"2025-12-05 14:57:13 UTC; tcadman","Author":"Mariska Slofstra [aut, cre] (ORCID:\n),\nSido Haakma [aut] (ORCID: ),\nTommy de Boer [aut] (ORCID: ),\nFleur Kelpin [aut] (ORCID: ),\nMorris Swertz [aut] (ORCID: ),\nTim Cadman [aut] (ORCID: )","Repository":"CRAN","Date/Publication":"2025-12-06 13:10:14 UTC","repoType":"cran","tarballUrl":"ftp://cran.r-project.org/pub/R/src/contrib/MolgenisArmadillo_2.9.3.tar.gz","jsonAuthors":[{"name":"Mariska Slofstra","email":"m.k.slofstra@umcg.nl","maintainer":true},{"name":"Sido Haakma","email":"s.haakma@rug.nl","maintainer":false},{"name":"Tommy de Boer","email":"t.de.boer01@umcg.nl","maintainer":false},{"name":"Fleur Kelpin","email":"fleur@kelpin.nl","maintainer":false},{"name":"Morris Swertz","email":"m.a.swertz@rug.nl","maintainer":false},{"name":"Tim Cadman","email":"t.j.cadman@umcg.nl","maintainer":false}],"readme":"MolgenisArmadillo\n================\n\n\n\n\n[![Build\nStatus](https://api.travis-ci.com/molgenis/molgenis-r-armadillo.svg?branch=master)](https://api.travis-ci.com/molgenis/molgenis-r-armadillo.svg?branch=master)\n[![CRAN\nstatus](https://www.r-pkg.org/badges/version/MolgenisArmadillo)](https://CRAN.R-project.org/package=MolgenisArmadillo)\n[![codecov](https://codecov.io/gh/molgenis/molgenis-r-armadillo/branch/master/graph/badge.svg?token=ITPMERAWYI)](https://app.codecov.io/gh/molgenis/molgenis-r-armadillo)\n\n\nClient to share data in a [MOLGENIS Armadillo DataSHIELD\nService](https://github.com/molgenis/molgenis-service-armadillo/).\n\n## Purpose\n\nThis library can be used by data managers to share datasets on a\nMOLGENIS Armadillo server. Researchers can then analyse these datasets\nand datasets shared on other servers using DataSHIELD. Researchers will\nonly be able to access aggregate information and cannot see individual\nrows.\n\n## Overview\n\nThe datasets are stored in shared folders on a MinIO file store. The\nMOLGENIS Armadillo server has access to the file store and can load the\ndata sets into a shielded RServe environment so that researchers can\ncall DataSHIELD analysis methods on the data.\n\n## Usage\n\nLogin to the service.\n\n``` r\nlibrary('MolgenisArmadillo')\narmadillo.login(\"https://armadillo-url-example.org\")\n```\n\nNow you can create a project and upload tables to the project to share\nthem for analysis.\n\n``` r\nlibrary(datasets)\narmadillo.create_project(\"project\")\narmadillo.upload_table(\"project\", \"folder\", iris)\n```\n\nListing the tables.\n\n``` r\narmadillo.list_tables(\"project\")\n```\n\nRemoving the data from the storage. First you need to remove the content\nof a project before you can throw away the project.\n\n``` r\narmadillo.delete_table(\"project\", \"folder\", \"iris\")\narmadillo.delete_project(\"project\")\n```\n\n## Documentation\n\nFor more in depth documentation please check the\n[howto](https://molgenis.github.io/molgenis-r-armadillo/articles/MolgenisArmadillo.html).\n\n## Armadillo 2\n\nThe newest version (2.x) of MolgenisArmadillo will be only compatible\nwith Armadillo version 3. If you still use Armadillo 2, you should use\nthe 1.1.13 version of MolgenisArmadillo. You can install this specific\nversion using the following commands:\n\n``` r\npackageurl <- \"https://cran.r-project.org/src/contrib/Archive/MolgenisArmadillo/MolgenisArmadillo_1.1.3.tar.gz\"\ninstall.packages(packageurl, repos=NULL, type=\"source\")\n```\nIf you already installed another version of the package, you might want to run this first:\n``` r\nremove.packages(\"MolgenisArmadillo\")\n```\nOn windows additional R packages like `rtools` might be required in order to install the `tar.gz` package from the url.\n\n## For developers\n\n- To build documentation, do `devtools::document()`\n- To run all unit tests, do `devtools::test()`\n- While writing code (or tests), you can use `devtools::load_all()` to\n quickly “install” the package.\n- To run a single test file, open it in Rstudio and do\n `devtools::test_active_file()`\n- To run the linter, do `devtools::lint()`. Tip: run it often :)\n- To create new README from Rmd: run `devtools::build_readme()`","jobInfo":{"package":"MolgenisArmadillo","version":"2.9.3","parsingStatus":"success","parserVersion":2,"parsedAt":"2025-12-06T14:29:59+0000"}}

Description

Usage

Arguments

Value

Examples