Morpho (version 1.0-1)

createAtlas: Create an atlas needed in placePatch

Description

Create an atlas needed in placePatch

Usage

createAtlas(mesh, landmarks, patch, corrCuves = NULL, patchCurves = NULL)

Arguments

mesh

triangular mesh representing the atlas' surface

landmarks

matrix containing landmarks defined on the atlas, as well as on each specimen in the corresponding sample.

patch

matrix containing semi-landmarks to be projected onto each specimen in the corresponding sample.

corrCuves

integer vector specifiyng the rowindices of landmarks to be curves defined on the atlas AND each specimen.

patchCurves

integer vector specifiyng the rowindices of patch to be curves only defined on the atlas.

Value

• Returns a list of class "atlas". Its content is corresponding to argument names.

See Also

placePatch, plotAtlas

Examples

data(nose)
atlas <- createAtlas(shortnose.mesh, landmarks =
            shortnose.lm[c(1:5,20:21),], patch=shortnose.lm[-c(1:5,20:21),])