morphodata

The <code>morphodata</code> class is designed for storing morphological data of individuals, their IDs and it's appertaining to population and taxon.

Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package is described in Šlenker et al. 2022.

Marek Slenker

MorphoTools2

Multivariate Morphometric Analysis

Marek Šlenker

Petr Koutecký

Karol Marhold

morphodata function

Class <code>morphodata</code>.<dl>
 <dt>ID</dt>
<dd>IDs of each row of <code>data</code> object.</dd> <dt>Population</dt>
<dd>population membership of each row of <code>data</code> object.</dd> <dt>Taxon</dt>
<dd>taxon membership of each row of <code>data</code> object.</dd> <dt>data</dt>
<dd><code>data.frame</code> of individuals (rows) and values of measured morphological characters (columns).</dd>
</dl>

Format

Class morphodata — morphodata

Class <code>morphodata</code>.<dl>
 <dt>ID</dt>
<dd>IDs of each row of <code>data</code> object.</dd>

 <dt>Population</dt>
<dd>population membership of each row of <code>data</code> object.</dd>

 <dt>Taxon</dt>
<dd>taxon membership of each row of <code>data</code> object.</dd>

 <dt>data</dt>
<dd><code>data.frame</code> of individuals (rows) and values of measured morphological characters (columns).</dd>


</dl>

morphodata: Class morphodata

Description

Arguments

Format