removeTaxon

removePopulation

removeSample

removeCharacter

These functions remove particular taxa, populations, samples or morphological characters from <code>morphodata</code> object. The samples can be deleted by names using <code>sampleName</code> argument, or each sample above the desired threshold <code>missingPercentage</code> will be deleted. Only one parameter can be specified in one run.

Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package is described in Šlenker et al. 2022.

Marek Slenker

MorphoTools2

Multivariate Morphometric Analysis

Marek Šlenker

Petr Koutecký

Karol Marhold

removeTaxon function

<dl><dt>object</dt>
<dd>object of class <code>morphodata</code>.</dd><dt>taxonName</dt>
<dd>vector of taxa to be removed.</dd><dt>populationName</dt>
<dd>vector of populations to be removed.</dd><dt>sampleName</dt>
<dd>vector of samples to be removed.</dd><dt>missingPercentage</dt>
<dd>a numeric, samples holding more missing data than specified by <code>missingPercentage</code> will be removed.</dd><dt>characterName</dt>
<dd>vector of characters to be removed.</dd></dl>

Arguments

Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object — removeTaxon

<dl>

<dt>object</dt>
<dd>object of class <code>morphodata</code>.</dd>

<dt>taxonName</dt>
<dd>vector of taxa to be removed.</dd>

<dt>populationName</dt>
<dd>vector of populations to be removed.</dd>

<dt>sampleName</dt>
<dd>vector of samples to be removed.</dd>

<dt>missingPercentage</dt>
<dd>a numeric, samples holding more missing data than specified by <code>missingPercentage</code> will be removed.</dd>

<dt>characterName</dt>
<dd>vector of characters to be removed.</dd>

</dl>

removeTaxon: Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object

Description

Usage

Value

Arguments

Examples