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Morphoscape (version 1.0.2)

Computation and Visualization of Adaptive Landscapes

Description

Implements adaptive landscape methods first described by Polly et al. (2016) for the integration, analysis and visualization of biological trait data on a phenotypic morphospace - typically defined by shape metrics.

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Version

Install

install.packages('Morphoscape')

Monthly Downloads

20

Version

1.0.2

License

GPL (>= 2)

Maintainer

Blake Dickson

Last Published

May 18th, 2023

Functions in Morphoscape (1.0.2)

krige_surf

Interpolate functional characteristics over a grid
calcPoly

Calculate polynomial fits over a surface
as_fnc_df

Convert a data frame to a fnc_df
calcWprimeBy

Compute optimally weighted adaptive landscapes by subgroup
generate_weights

Generate a matrix containing weight combinations
lands.grp.test

Significance tests between sets of weights
calc_all_lscps

Calculate adaptive landscapes for a matrix of weights
lscp_operations

Simple Operations on Spatial Data
calc_lscp

Calculate a single weighted adaptive landscape
calcGrpWprime

Compute optimally weighted adaptive landscapes
resample_grid

Create a full grid from a set of coordinates
warps

Simulated Shape Warps
plot.kriged_surfaces

Plots Kriged surfaces of functional characteristics
plot.wtd_lscp

Plot Adaptive Landscapes
turtles

Turtle Humeri