Mulcom (version 1.22.0)

mulDiff: MulCom Test Differential analysis

Description

Identify the differentially expressed features for a specific comparison with given m and t value

Usage

mulDiff(eset, Mulcom_P, m, t, ind)

Arguments

eset

An ExpressionSet object from package affy

Mulcom_P

An object of class Mulcom_P

m

the m values for the analysis

t

the t values for the analysis

ind

and index refeing to te comparison, should be numeric

Value

eset

An ExpressionSet object from package affy

Mulcom_P

An object of class Mulcom_P

m

the m values for the analysis

t

the t values for the analysis

ind

and index refeing to te comparison, should be numeric

Examples

data(benchVign)
mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7)
mulcom_diff <- mulDiff(Affy, mulcom_perm, 0.2, 2)