Mulcom (version 1.22.0)

mulFSG: MulCom False Significant Genes

Description

Calculate the False Significant Genes for m and t defined by the user

Usage

mulFSG(Mulcom_P, m, t)

Arguments

Mulcom_P

an object of class MULCOM

m

m: a numeric value corresponding to log 2 ratio correction for MulCom Test

t

t: a numeric value corresponding to t values for MulCom Test

Details

mulFDR evaluate the False Significant genes on the Mulcom_P object according to specific m and t parameters. For each permutation it is calculated the number of positive genes. An estimation of the false called genes is evaluated with the median for each experimental subgroups

Examples

data(benchVign)
mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7)
mulcom_fsg <- mulFSG(mulcom_perm, 0.2, 2)