Mulcom (version 1.22.0)

mulOptPars: MulCom Parameter Optimization

Description

Function to optimize Mulcom parameter for maximim nuber of genes with a user defined FDR

Usage

mulOptPars(opt, ind, ths)

Arguments

opt

an MulCom optimization object

ind

index corresponding to the comparison

ths

a threshold for the FDR optimization, default is 0.05

Details

mulOptPars MulCom optimization function to identify best parameters

Examples

data(benchVign)
mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7)
#mulcom_opt <- mulOpt(mulcom_perm, seq(0.1, 0.5, 0.1), seq(1, 3, 0.1))
#optThs <- mulOptPars(mulcom_opt, 1, 0.05)