Mulcom (version 1.22.0)

mulOptPlot: MulCom optimization Plot

Description

MulCom optimization Plot to identify best configuration paramters

Usage

mulOptPlot(M.Opt, ind, th, smooth = "NO")

Arguments

M.Opt

an MulCom optimization object

ind

index corresponding to the comparison to plot

th

a threshold for the FDR plot

smooth

indicates whether the FDR plot will show a significant threshold or will be continuous.

Value

Details

mulOptPlot MulCom optimization Plot

Examples

   data(benchVign)
   mulcom_perm <- mulPerm(Affy, Affy$Groups, 10,2)
   mulcom_opt <- mulOpt(mulcom_perm, vm=seq(0.1, 0.5, 0.1), vt=seq(1, 3,1))
   mulOptPlot(mulcom_opt, 1, 0.05)