Mulcom (version 1.22.0)

mulPerm: MulCom Permutation

Description

Reiterate MulCom Test on permutated data to perform Montecarlo simulation

Usage

mulPerm(eset, index, np, seed, segm = "F")

Arguments

eset

An an AffyBatch object, each row of must correspond to a variable and each column to a sample.

index

a numeric vector of length ncol(data) with the labels of the samples. 0 are the reference samples.

np

a numeric values indicating the number of permutation to perform. It is set as default to 10

seed

set the seed of the permutaton, default is 1

segm

a default set to F. This parametheres requires to be setted to avoid segmentation fault of C subroutin in the case of very large datasets.

Details

mulPerm

Examples

data(benchVign)
mulcom_perm <- mulPerm(Affy, Affy$Groups, 10,2)