evaluate_clustering

The readouts the clustering and similarity matrix are based
on.

readouts

clustering

The similarity matrix, this clustering is based on.

The method to evaluate the given clustering. This might be one
of "silhouette", "sdindex", "ptbiserial", "dunn", "bw", or
"custom'.

method

A custom function to be run for evaluating a clustering.
Only used with method "custom".

custom_eval

Further arguments that are passed to a custom function.

Evaluate a clustering using the given method

Tools necessary to reconstruct clonal affiliations from
temporally and/or spatially separated measurements of viral
integration sites. For this means it utilizes correlations present
in the relative readouts of the integration sites. Furthermore,
facilities for filtering of the data and visualization of different
steps in the pipeline are provided with the package.

evaluate_clustering: Evaluate a clustering using the given method

Description

Usage

Arguments

Value