MultiDataSet (version 1.0.2)

checkProbes: Filter MethylationSet probes

Description

This function selects probes present in the annotation matrix. Probes without annotation and annotation values without beta values are discarded.

Usage

checkProbes(object)

Arguments

object

MethylationSet

Value

MethylationSet containing the common samples.

Examples

if (require(MEALData)){
 betavals <- betavals[1:100, ]  ## To speed up the example, the beta values are reduced
 methy <- prepareMethylationSet(betavals, pheno)
 checkProbes(methy)
}