MultiDataSet (version 1.0.2)

checkSamples: Modify a MethylationSet to only contain common samples

Description

This function removes samples that have beta values but no phenotypes and vice versa. If snps object is present, only samples present in the three set are retained.

Usage

checkSamples(object)

Arguments

object

MethylationSet

Value

MethylationSet containing the common samples.

Examples

if (require(MEALData)){
 betavals <- betavals[1:100, ]  ## To speed up the example, the beta values are reduced
 methy <- prepareMethylationSet(betavals, pheno)
 checkSamples(methy)
}