class:CoverageGRanges

CoverageGRanges-class

class:CoverageParameters

CoverageParameters-class

CoverageGRanges

CoverageParameters

A <code>CoverageGRanges</code> is a <code><links4class>ProxyGRanges</links4class></code> that
  computes the <code><a href="/link/coverage?package=MutableRanges&version=0.6.2&to=IRanges" rd-options="IRanges" data-mini-rdoc="IRanges::coverage">coverage</a></code> of another
  <code>GenomicRanges</code>. Subclasses can override the
  <code>processCoverage</code> method to perform operations on the coverage,
  as an <code><a href="/link/Rle?package=MutableRanges&version=0.6.2&to=IRanges" rd-options="IRanges" data-mini-rdoc="IRanges::Rle">Rle</a></code>, before the result is returned. See
  <code><a href="/link/setCoverageGRangesClass?package=MutableRanges&version=0.6.2" rd-options="" data-mini-rdoc="MutableRanges::setCoverageGRangesClass">setCoverageGRangesClass</a></code> for defining a subclass.

Extends fundamental data structures in the Bioconductor sequencing stack using reference classes from the methods package.

Michael Lawrence

MutableRanges

Mutable data structures for genomic intervals

CoverageGRanges-class function

A <code>CoverageGRanges</code> is a <code><linkS4class>ProxyGRanges</linkS4class></code> that
  computes the <code><a href="coverage" rd-options="IRanges">coverage</a></code> of another
  <code>GenomicRanges</code>. Subclasses can override the
  <code>processCoverage</code> method to perform operations on the coverage,
  as an <code><a href="Rle" rd-options="IRanges">Rle</a></code>, before the result is returned. See
  <code><a href="setCoverageGRangesClass" rd-options="">setCoverageGRangesClass</a></code> for defining a subclass.

CoverageGRanges-class: CoverageGRanges objects

Description

Arguments

See Also