class:DynamicGRanges

DynamicGRanges-class

cacheEnabled

cacheEnabled,DynamicGRanges-method

cacheEnabled<-

cacheEnabled<-,DynamicGRanges-method

purgeCache

purgeCache,DynamicGRanges-method

colnames,DynamicGRanges-method

seqinfo,DynamicGRanges-method

seqnames,DynamicGRanges-method

ranges,DynamicGRanges-method

strand,DynamicGRanges-method

[,DynamicGRanges,RangeQuery,missing,missing-method

[<-,DynamicGRanges,RangeQuery,missing-method

update,DynamicGRanges-method

A <code>DynamicGRanges</code> is a virtual subclass of
  <code><links4class>MutableGRanges</links4class></code> that is implemented against some
  other data source. It implements an optional caching mechanism, under
  the assumption that the data access will generally be expensive.

Extends fundamental data structures in the Bioconductor sequencing stack using reference classes from the methods package.

Michael Lawrence

MutableRanges

Mutable data structures for genomic intervals

DynamicGRanges-class function

<code>DynamicGRanges</code> is a virtual class. Subclasses implement the
  actual data access layer by overriding the <code>fetchFromSource</code>
  method, which takes a <code>RangeQuery</code> as its only argument. The
  method is only invoked for regions missing from the cache.

Subclassing

A <code>DynamicGRanges</code> is a virtual subclass of
  <code><linkS4class>MutableGRanges</linkS4class></code> that is implemented against some
  other data source. It implements an optional caching mechanism, under
  the assumption that the data access will generally be expensive.

DynamicGRanges objects

DynamicGRanges-class: DynamicGRanges objects

Description

Arguments

Subclassing