class:FilterGRanges

FilterGRanges-class

class:FilterParameters

FilterParameters-class

setFilterGRangesClass

The prefix for the name of the class, prepended
    to <dquote>FilterGRanges</dquote>

prefix

Function that becomes the <code>filter</code> method. Takes a
    single argument: the <code>GenomicRanges</code> to filter. The function
    should return a logical vector indicating which records should pass
    the filter.

filter

The environment in which to define the class.

where

Additional arguments passed to <code><a href="/link/setProxyGRangesClass?package=MutableRanges&version=0.6.2" rd-options="" data-mini-rdoc="MutableRanges::setProxyGRangesClass">setProxyGRangesClass</a></code>

A <code>FilterGRanges</code> is a virtual subclass of
  <code><links4class>ProxyGRanges</links4class></code> that filters the data from some
  delegate <code>GenomicRanges</code>. The actual filtering is
  implemented by a subclass. The easiest way to define a subclass is to
  call the <code>setFilterGRangesClass</code> function, described here.

Extends fundamental data structures in the Bioconductor sequencing stack using reference classes from the methods package.

Michael Lawrence

MutableRanges

Mutable data structures for genomic intervals

FilterGRanges-class function

The prefix for the name of the class, prepended
    to <dQuote>FilterGRanges</dQuote>

Additional arguments passed to <code><a href="setProxyGRangesClass" rd-options="">setProxyGRangesClass</a></code>

A <code>FilterGRanges</code> is a virtual subclass of
  <code><linkS4class>ProxyGRanges</linkS4class></code> that filters the data from some
  delegate <code>GenomicRanges</code>. The actual filtering is
  implemented by a subclass. The easiest way to define a subclass is to
  call the <code>setFilterGRangesClass</code> function, described here.

FilterGRanges-class: FilterGRanges objects

Description

Usage

Arguments

See Also