setTransformGRangesClass

The string prepended onto <dquote>TransformGRanges</dquote> to form the
    class name.

prefix

The function implementing the transformation, taking the
    raw <code>GenomicRanges</code> and any parameters as arguments.

transform

The function implementing the reverse transform, or <code>NULL</code> if
    reverse transformation is impossible.

reverseTransform

Named list of parameters class names, just how fields are specified
    to <code><a href="/link/setRefClass?package=MutableRanges&version=0.6.2&to=methods" rd-options="methods" data-mini-rdoc="methods::setRefClass">setRefClass</a></code>. The parameter values are
    passed as individual arguments to <code>transform</code> and
    <code>reverseTransform</code>.

parameters

The environment in which to define the class and assign the constructors.

where

This function is a utility for defining subclasses of
  <code><links4class>TransformGRanges</links4class></code>, a <code>ProxyGRanges</code>
  derivative that transforms one or more columns in the element
  metadata. The transformation is implemented by the subclass.

Extends fundamental data structures in the Bioconductor sequencing stack using reference classes from the methods package.

Michael Lawrence

MutableRanges

Mutable data structures for genomic intervals

setTransformGRangesClass function

<code><a href="/link/setProxyGRangesClass?package=MutableRanges&version=0.6.2" rd-options="" data-mini-rdoc="MutableRanges::setProxyGRangesClass">setProxyGRangesClass</a></code>

code

The string prepended onto <dQuote>TransformGRanges</dQuote> to form the
    class name.

Named list of parameters class names, just how fields are specified
    to <code><a href="setRefClass" rd-options="methods">setRefClass</a></code>. The parameter values are
    passed as individual arguments to <code>transform</code> and
    <code>reverseTransform</code>.

This function is a utility for defining subclasses of
  <code><linkS4class>TransformGRanges</linkS4class></code>, a <code>ProxyGRanges</code>
  derivative that transforms one or more columns in the element
  metadata. The transformation is implemented by the subclass.

setTransformGRangesClass: Define TransformGRanges subclass

Description

Usage

Arguments

Value

code

See Also