GSE74821

NanoString nCounter RUO-PAM50 Gene Expression Custom CodeSet

datasets

NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.

Mickaël Canouil

NACHO

NanoString Quality Control Dashboard

Roderick Slieker

Gerard Bouland

GSE74821 function

A [<a href="/link/list?package=NACHO&version=2.0.6" data-mini-rdoc="NACHO::list">list</a>] object of class <code>"nacho"</code>.

Format

A "nacho" object containing 20 samples of GSE74821 dataset — GSE74821

A [<a href='https://rdrr.io/r/base/list.html'>list</a>] object of class <code>"nacho"</code>.

GSE74821: A "nacho" object containing 20 samples of GSE74821 dataset

Description

Usage

Arguments

Format